Publications
  1. Sayyed-Ahmad A, Lichtenberger, LM and Gorfe AA, “Structure and dynamics of cholic acid and dodecylphosphocholine-cholic acid aggregates” Langmuir, 26(16):13407-14, 2010
  2. Sayyed-Ahmad A, Khandelia H and Kaznessis YN “Relative Binding Free Energy Calculations between Antimicrobial Peptides and SDS or DPC micelles” Molecular Simulation, 35(10-11):986-997, 2009.
  3. Sayyed-Ahmad A and Kaznessis YN “Determining the orientation of the Beta-hairpin antimicrobial peptide Protegrin-1 in a DLPC lipid bilayer using an implicit solvent-membrane model” . PLoS One ;4(3):e479, 2009
  4. Bolintineanu DS, Sayyed-Ahmad A, Davis HT and Kaznessis YN “Poisson-Nernst-Planck models of nonequilibrium ion electrodiffusion through a protegrin transmembrane pore”. PLoS computational biology, 5 (1) : e1000277. doi:10.1371/journal.pcbi.1000277, 2009.
  5. Langham A, Sayyed-Ahmad A and Kaznessis YN "On the nature of antimicrobial activity: a model for Protegrin-1",  Journal of American Chemical Society, 130(13):4338-4346, 2008
  6. Sayyed-Ahmad A, Miao Y and Ortoleva P "Poisson-Boltzmann Theory of Bionanosystems" , Communications in Computational Physics, 3:1100-1116, 2008.
  7. Karain WI, Ajarmeh B, and Qaraeen N,"The dynamics of inter-residue distances in Bovine Pancreatic Trypsin Inhibitor", Physica A 376, 394-400, 2007.
  8. Lee J, Sayyed-Ahmad A, Sheen D “Basin Model Inversion Using Information Theory and Seismic Data”, Geophysics 72:6, 2007
  9. Sayyed-Ahmad A, Tuncay K, and Ortoleva P "Transcriptional regulatory network refinement and quantification through kinetic modeling, gene expression microarray data and information theory", BMC Bioinformatics, 8:20, 2007. (Research highlights & Highly Accessed)
  10. Karain WI, Qaraeen N, Ajarmeh, "A stochastic model for correlated protein motion", Physics Letters A, 354:,497-500, 2006
  11. Sayyed-Ahmad A, Tuncay K, and Ortoleva P “Efficient solution technique for solving Poisson Boltzmann equation”, Journal of Computational Chemistry, 25(8):1068-1074, 2004.
  12. Sayyed-Ahmad A, Tuncay K, and Ortoleva P “Toward Automated Cell Model Development through Information Theory”, Journal of Physical Chemistry A, 107(49):10554-10565, 2003
  13. Ortoleva P, Berry E, Fan J , Fontus M, Navid A, Sayyed-Ahmad A, Sharif Z, Stanley F, Tuncay K, Weitzke E, and Wu L ”Karyote physico-chemical genome, proteome, metabolome cell modeling system”, Omics: A Journal of Integrative Biology, 7(3):269-283(15), 2003.
  14. Karain WI, Bourenkov GP, Blume H, and Bartunik HD,"Automated mounting, centering, and screening of crystals for high-throughput protein crystallography" , Acta Cryst. D58, 1519-1522, 2002.

©  Abdallah Sayyed-Ahmad 2010